Motif analysis of Glycyrrhiza uralensis

Combining text-mining technology with data sources from plantCARE, PLACE, AthMap etc. We collected 930 motifs with published annotations. With these identified motifs and published annotations, we predicted TF/TR-binding regions. In addition to scanning for motif sequences, we offer a Z-score method that calculates the significance enrichment of motifs.

1. Sequence scan

Please input a FASTA sequence, we will find all the possible motifs.

  Example

   

2. Name scan

Please input a list of Glycyrrhiza uralensis gene names, and we will compute the significant motifs located at 3000 bp upstream of the gene, then show each motif and its frequency. A job ID is generated so you can retrieve the result later.

  Example

Input your email address (optional)



   


Or submit your previous job ID



   

3. Custom motif scan

Please input a list of Glycyrrhiza uralensis gene names and the motif sequences you are interested in. We will extract all these genes' promoter sequences (3000 bp upstream), then show each motif's frequency and significance.

  Example

Please input motifs separated by ":"



   


Or submit your previous job ID



   

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved