Gene detail information of Glyur012217s00047278.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80820.1 | 5.00E-41 | cinnamoyl coa reductase |
| NR | ACU24500.1 | 4.80E-75 | unknown [Glycine max] |
| COG | YP_002017749.1 | 6.00E-23 | NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1] |
| Swissprot | tr|Q9S9N9|CCR1_ARATH | 6.00E-55 | Cinnamoyl-CoA reductase 1 |
| trEMBL | tr|C6TNK8|C6TNK8_SOYBN | 2.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G23310.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold12217 | 639 | 1004 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09753 | CCR | EC:1.2.1.44 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.165 |
| SRR1783600 | control | 7.319 |
| SRR1783602 | moderate drought stress | 5.316 |
| SRR1811619 | moderate drought stress | 5.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.337 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.604 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.951 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.578 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.688 |
| SRR2868004 | Drought Stress (root) | 25.452 |
| SRR2967015 | Control (root) | 21.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.891 |
| SRR9715740 | Leaf | 6.207 |
| SRR9715741 | Leaf | 42.705 |
| SRR9715739 | Root | 9.850 |
| SRR9715742 | Root | 44.268 |
| SRR9715743 | Root | 42.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.318 |
| SRR8749028 | MeJA induced 9h | 1.040 |
| SRR8749029 | MeJA induced 9h | 1.209 |
| SRR8749030 | Uninduced | 5.278 |
| SRR8749031 | Uninduced | 0.511 |
| SRR8749032 | Uninduced | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.663 |
| SRR8400027 | Control - Root | 20.546 |