Gene detail information of Glyur012197s00047484 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003542770.1 | 4.20E-32 | PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max] |
| trEMBL | tr|K7M0F0|K7M0F0_SOYBN | 3.00E-33 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G25160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold12197 | 611 | 865 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.270 |
| SRR1783600 | control | 26.479 |
| SRR1783602 | moderate drought stress | 27.469 |
| SRR1811619 | moderate drought stress | 28.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 46.302 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.513 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.856 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.437 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.467 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.207 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.823 |
| SRR2868004 | Drought Stress (root) | 33.459 |
| SRR2967015 | Control (root) | 27.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.843 |
| SRR9715740 | Leaf | 26.402 |
| SRR9715741 | Leaf | 20.396 |
| SRR9715739 | Root | 6.619 |
| SRR9715742 | Root | 14.064 |
| SRR9715743 | Root | 13.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 177.998 |
| SRR8749028 | MeJA induced 9h | 98.230 |
| SRR8749029 | MeJA induced 9h | 236.581 |
| SRR8749030 | Uninduced | 130.661 |
| SRR8749031 | Uninduced | 193.779 |
| SRR8749032 | Uninduced | 196.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.605 |
| SRR8400027 | Control - Root | 26.643 |