Gene detail information of Glyur012155s00047261 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17680.2 | 2.00E-35 | tetratricopeptide repeat (TPR)-containing protein |
| NR | XP_003637648.1 | 2.90E-52 | General transcription factor 3C polypeptide, partial [Medicago truncatula] |
| trEMBL | tr|G7ZZZ8|G7ZZZ8_MEDTR | 1.00E-52 | General transcription factor 3C polypeptide {ECO:0000313|EMBL:AES84786.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold12155 | 84 | 600 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.472 |
| SRR1783600 | control | 9.354 |
| SRR1783602 | moderate drought stress | 10.818 |
| SRR1811619 | moderate drought stress | 10.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.814 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.680 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.107 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.211 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.359 |
| SRR2868004 | Drought Stress (root) | 10.781 |
| SRR2967015 | Control (root) | 9.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.175 |
| SRR9715740 | Leaf | 12.935 |
| SRR9715741 | Leaf | 12.207 |
| SRR9715739 | Root | 1.548 |
| SRR9715742 | Root | 6.897 |
| SRR9715743 | Root | 3.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.896 |
| SRR8749028 | MeJA induced 9h | 8.086 |
| SRR8749029 | MeJA induced 9h | 17.535 |
| SRR8749030 | Uninduced | 4.355 |
| SRR8749031 | Uninduced | 3.032 |
| SRR8749032 | Uninduced | 4.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.015 |
| SRR8400027 | Control - Root | 12.957 |