Gene detail information of Glyur012083s00046635.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41850.1 | 6.00E-34 | polygalacturonase abscission zone A. thaliana |
| NR | XP_007145607.1 | 9.00E-50 | hypothetical protein PHAVU_007G2531001g, partial [Phaseolus vulgaris] |
| COG | YP_006284264.1 | 4.00E-10 | Polygalacturonase [Pectobacterium sp. SCC3193] |
| Swissprot | tr|P35336|PGLR_ACTDE | 7.00E-43 | Polygalacturonase (Precursor) |
| trEMBL | tr|V7BLY7|V7BLY7_PHAVU | 3.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:ESW17601.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold12083 | 79 | 1002 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur012083s00046635.1 | PF00295.12 | Glyco_hydro_28 | 1 | 90 | 6.70E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.092 |
| SRR1783602 | moderate drought stress | 0.404 |
| SRR1811619 | moderate drought stress | 0.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.799 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.227 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.216 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.076 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.205 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.307 |
| SRR9715743 | Root | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.325 |
| SRR8400027 | Control - Root | 0.565 |