Gene detail information of Glyur011803s00047756 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38270.1 | 4.00E-77 | CAX-interacting protein 2 |
| NR | XP_004506738.1 | 4.11E-112 | PREDICTED: monothiol glutaredoxin-S16, chloroplastic-like [Cicer arietinum] |
| COG | YP_004687066.1 | 4.00E-30 | glutaredoxin-like protein [Cupriavidus necator N-1] |
| Swissprot | tr|Q8H7F6|GRS16_ARATH | 7.00E-96 | Monothiol glutaredoxin-S16, chloroplastic (Precursor) |
| trEMBL | tr|V7AMR5|V7AMR5_PHAVU | 2.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:ESW06779.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold11803 | 88 | 591 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur011803s00047756.1 | PF00462.19 | Glutaredoxin | 79 | 146 | 6.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.334 |
| SRR1783600 | control | 44.094 |
| SRR1783602 | moderate drought stress | 30.162 |
| SRR1811619 | moderate drought stress | 30.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.322 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.381 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 68.869 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 65.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.122 |
| SRR2868004 | Drought Stress (root) | 27.411 |
| SRR2967015 | Control (root) | 23.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 76.895 |
| SRR9715740 | Leaf | 79.482 |
| SRR9715741 | Leaf | 82.958 |
| SRR9715739 | Root | 35.599 |
| SRR9715742 | Root | 31.424 |
| SRR9715743 | Root | 35.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.233 |
| SRR8749028 | MeJA induced 9h | 17.902 |
| SRR8749029 | MeJA induced 9h | 24.979 |
| SRR8749030 | Uninduced | 13.865 |
| SRR8749031 | Uninduced | 8.246 |
| SRR8749032 | Uninduced | 7.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.152 |
| SRR8400027 | Control - Root | 44.814 |