Gene detail

Gene detail information of Glyur011781s00046718

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08860.1	1.00E-49	PYRIMIDINE 4
NR	ACJ85549.1	3.16E-90	unknown [Medicago truncatula]
COG	YP_001817512.1	2.00E-36	class III aminotransferase [Opitutus terrae PB90-1]
Swissprot	tr\|Q9SR86\|AGT23_ARATH	4.00E-58	Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBL	tr\|B7FLB5\|B7FLB5_MEDTR	1.00E-90	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ85549.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold11781	218	1170	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00827	AGXT2	EC:2.6.1.44 2.6.1.40	Alanine, aspartate and glutamate metabolism	map00250
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur011781s00046718.1	PF00202.16	Aminotran_3	164	238	6.00E-15

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	10.958
SRR1783600	control	10.437
SRR1783602	moderate drought stress	27.545
SRR1811619	moderate drought stress	26.263

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.486
DRR006520	Root Summer glycyrrhizin high producing strain	12.686
DRR006521	Root Winter glycyrrhizin high producing strain	65.806
DRR006522	Root Winter glycyrrhizin high producing strain	64.187
DRR006523	Root Summer glycyrrhizin low producing strain	12.880
DRR006524	Root Summer glycyrrhizin low producing strain	12.402
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.297
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.475

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.774
SRR2868004	Drought Stress (root)	45.650
SRR2967015	Control (root)	43.021

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.317
SRR9715740	Leaf	3.819
SRR9715741	Leaf	8.159
SRR9715739	Root	7.928
SRR9715742	Root	23.742
SRR9715743	Root	21.269

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.150
SRR8749028	MeJA induced 9h	69.511
SRR8749029	MeJA induced 9h	16.361
SRR8749030	Uninduced	10.561
SRR8749031	Uninduced	5.347
SRR8749032	Uninduced	32.258

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.568
SRR8400027	Control - Root	14.174