Gene detail information of Glyur011622s00047417 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48540.1 | 2.00E-74 | receptor-like protein kinase-related family protein |
| NR | XP_004492208.1 | 4.73E-146 | PREDICTED: cysteine-rich repeat secretory protein 55-like [Cicer arietinum] |
| Swissprot | tr|Q9LV60|CRR55_ARATH | 2.00E-101 | Cysteine-rich repeat secretory protein 55 (Precursor) |
| trEMBL | tr|I3S0A1|I3S0A1_LOTJA | 8.00E-143 | Uncharacterized protein {ECO:0000313|EMBL:AFK33693.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold11622 | 141 | 863 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur011622s00047417.1 | PF01657.12 | Stress-antifung | 5 | 104 | 7.70E-27 |
| Glyur011622s00047417.1 | PF01657.12 | Stress-antifung | 122 | 218 | 4.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.919 |
| SRR1783600 | control | 1.989 |
| SRR1783602 | moderate drought stress | 0.397 |
| SRR1811619 | moderate drought stress | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.444 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.236 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.891 |
| SRR2868004 | Drought Stress (root) | 4.933 |
| SRR2967015 | Control (root) | 1.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.275 |
| SRR9715740 | Leaf | 0.112 |
| SRR9715741 | Leaf | 2.199 |
| SRR9715739 | Root | 0.367 |
| SRR9715742 | Root | 1.503 |
| SRR9715743 | Root | 1.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.217 |
| SRR8749028 | MeJA induced 9h | 15.077 |
| SRR8749029 | MeJA induced 9h | 13.522 |
| SRR8749030 | Uninduced | 1.172 |
| SRR8749031 | Uninduced | 1.856 |
| SRR8749032 | Uninduced | 0.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.608 |
| SRR8400027 | Control - Root | 1.881 |