Gene detail information of Glyur011555s00047928 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67360.2 | 5.00E-35 | Rubber elongation factor protein (REF) |
| NR | XP_004504442.1 | 2.23E-76 | PREDICTED: REF/SRPP-like protein At1g67360-like [Cicer arietinum] |
| Swissprot | tr|Q9FYF7|Y1736_ARATH | 3.00E-42 | REF/SRPP-like protein At1g67360 |
| trEMBL | tr|A0A072TUR8|A0A072TUR8_MEDTR | 2.00E-73 | Rubber elongation factor protein {ECO:0000313|EMBL:KEH20598.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold11555 | 404 | 829 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur011555s00047928.1 | PF05755.7 | REF | 1 | 129 | 2.10E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.767 |
| SRR1783600 | control | 33.770 |
| SRR1783602 | moderate drought stress | 38.856 |
| SRR1811619 | moderate drought stress | 35.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 104.849 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 103.552 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.272 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.959 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 52.227 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 153.790 |
| SRR2868004 | Drought Stress (root) | 120.194 |
| SRR2967015 | Control (root) | 94.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 74.422 |
| SRR9715740 | Leaf | 93.732 |
| SRR9715741 | Leaf | 80.935 |
| SRR9715739 | Root | 28.202 |
| SRR9715742 | Root | 42.943 |
| SRR9715743 | Root | 35.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 395.094 |
| SRR8749028 | MeJA induced 9h | 76.334 |
| SRR8749029 | MeJA induced 9h | 130.891 |
| SRR8749030 | Uninduced | 3.749 |
| SRR8749031 | Uninduced | 1.494 |
| SRR8749032 | Uninduced | 7.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 126.195 |
| SRR8400027 | Control - Root | 117.823 |