Gene detail information of Glyur011353s00046352 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76160.1 | 3.00E-101 | SKU5 similar 5 |
| NR | KHN46930.1 | 8.97E-146 | L-ascorbate oxidase like [Glycine soja] |
| Swissprot | tr|Q00624|ASOL_BRANA | 2.00E-76 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|V7AFF8|V7AFF8_PHAVU | 4.00E-144 | Uncharacterized protein {ECO:0000313|EMBL:ESW03578.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold11353 | 199 | 1185 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur011353s00046352.1 | PF07731.9 | Cu-oxidase_2 | 54 | 189 | 5.70E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.364 |
| SRR1783600 | control | 7.142 |
| SRR1783602 | moderate drought stress | 3.631 |
| SRR1811619 | moderate drought stress | 3.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.098 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.675 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.618 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 165.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 170.232 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.802 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.136 |
| SRR2868004 | Drought Stress (root) | 67.000 |
| SRR2967015 | Control (root) | 37.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.077 |
| SRR9715740 | Leaf | 28.383 |
| SRR9715741 | Leaf | 33.274 |
| SRR9715739 | Root | 16.088 |
| SRR9715742 | Root | 15.958 |
| SRR9715743 | Root | 16.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 357.787 |
| SRR8749028 | MeJA induced 9h | 293.701 |
| SRR8749029 | MeJA induced 9h | 681.629 |
| SRR8749030 | Uninduced | 484.482 |
| SRR8749031 | Uninduced | 240.516 |
| SRR8749032 | Uninduced | 173.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.180 |
| SRR8400027 | Control - Root | 19.835 |