Gene detail

Gene detail information of Glyur011173s00047934

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20820.1	1.00E-46	FAD-binding Berberine family protein
NR	XP_003524099.2	1.38E-80	PREDICTED: cannabidiolic acid synthase-like 2-like [Glycine max]
COG	YP_001252809.1	4.00E-08	FAD-dependent oxidoreductase [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|A6P6W0\|CASL1_CANSA	2.00E-53	Cannabidiolic acid synthase-like 1 (Precursor)
trEMBL	tr\|I1K2W8\|I1K2W8_SOYBN	5.00E-81	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25460.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold11173	792	1328	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur011173s00047934.1	PF01565.18	FAD_binding_4	85	176	6.40E-16

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	95.877
SRR1783600	control	93.339
SRR1783602	moderate drought stress	52.005
SRR1811619	moderate drought stress	53.111

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.249

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.700
SRR2868004	Drought Stress (root)	6.153
SRR2967015	Control (root)	5.123

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.094
SRR9715740	Leaf	0.410
SRR9715741	Leaf	1.153
SRR9715739	Root	144.523
SRR9715742	Root	80.778
SRR9715743	Root	89.014

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.978
SRR8749028	MeJA induced 9h	82.114
SRR8749029	MeJA induced 9h	14.370
SRR8749030	Uninduced	2.000
SRR8749031	Uninduced	20.775
SRR8749032	Uninduced	3.521

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	265.976
SRR8400027	Control - Root	200.922