Gene detail information of Glyur010926s00045831 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35100.2 | 9.00E-11 | plasma membrane intrinsic protein 3 |
| NR | CAL07977.1 | 2.23E-12 | aquaporin [Platanus x acerifolia] |
| Swissprot | tr|P42767|PIP1_ATRCA | 7.00E-14 | Aquaporin PIP-type |
| trEMBL | tr|Q14K83|Q14K83_PLAAC | 8.00E-13 | Aquaporin {ECO:0000313|EMBL:CAL07977.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold10926 | 1064 | 1156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 198.513 |
| SRR1783600 | control | 198.047 |
| SRR1783602 | moderate drought stress | 127.197 |
| SRR1811619 | moderate drought stress | 122.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 159.879 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 155.328 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.593 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.774 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 69.730 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.043 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 184.890 |
| SRR2868004 | Drought Stress (root) | 96.364 |
| SRR2967015 | Control (root) | 112.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.585 |
| SRR9715740 | Leaf | 1.334 |
| SRR9715741 | Leaf | 5.299 |
| SRR9715739 | Root | 55.840 |
| SRR9715742 | Root | 41.977 |
| SRR9715743 | Root | 34.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.426 |
| SRR8749028 | MeJA induced 9h | 15.274 |
| SRR8749029 | MeJA induced 9h | 43.932 |
| SRR8749030 | Uninduced | 4.441 |
| SRR8749031 | Uninduced | 0.121 |
| SRR8749032 | Uninduced | 2.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 74.251 |
| SRR8400027 | Control - Root | 93.711 |