Gene detail information of Glyur010403s00046212 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11150.1 | 1.00E-50 | vacuolar ATP synthase subunit E1 |
| NR | XP_003533059.1 | 2.18E-70 | PREDICTED: V-type proton ATPase subunit E-like isoform X1 [Glycine max] |
| Swissprot | tr|O23948|VATE_GOSHI | 2.00E-69 | V-type proton ATPase subunit E |
| trEMBL | tr|I1KPH3|I1KPH3_SOYBN | 5.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G02390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold10403 | 246 | 1457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur010403s00046212.1 | PF01991.13 | vATP-synt_E | 16 | 120 | 2.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.948 |
| SRR1783600 | control | 19.726 |
| SRR1783602 | moderate drought stress | 6.029 |
| SRR1811619 | moderate drought stress | 5.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.192 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.502 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.407 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.930 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.730 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.306 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.741 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.955 |
| SRR2868004 | Drought Stress (root) | 24.132 |
| SRR2967015 | Control (root) | 25.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.317 |
| SRR9715740 | Leaf | 7.760 |
| SRR9715741 | Leaf | 6.035 |
| SRR9715739 | Root | 10.906 |
| SRR9715742 | Root | 8.869 |
| SRR9715743 | Root | 9.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.313 |
| SRR8749028 | MeJA induced 9h | 9.584 |
| SRR8749029 | MeJA induced 9h | 11.684 |
| SRR8749030 | Uninduced | 0.735 |
| SRR8749031 | Uninduced | 0.582 |
| SRR8749032 | Uninduced | 1.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.360 |
| SRR8400027 | Control - Root | 35.426 |