Gene detail

Gene detail information of Glyur010335s00045762

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10550.3	4.00E-57	Subtilase family protein
NR	XP_007131420.1	6.43E-128	hypothetical protein PHAVU_011G012100g [Phaseolus vulgaris]
COG	YP_001709364.1	2.00E-25	peptidase [Clavibacter michiganensis subsp. sepedonicus]
Swissprot	tr\|Q9MAP5\|SBT33_ARATH	8.00E-72	Subtilisin-like protease SBT3.3 {ECO:0000303\|PubMed:16193095} (Precursor)
trEMBL	tr\|V7AD57\|V7AD57_PHAVU	2.00E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESW03414.1}

Sequence

Transcript Sequence

>Glyur010335s00045762.1
CATATATGCAATCATTCAATATGTGATTAAATATTTCTAAAGCTAATAAAATCGCTAAAGTAAAAGTAGTATCCTGAATACACACACTCCTCACCAAAGCACTCTGGTGATGAAAATCAAAAGTGCATTTTGGCAAAAGAAAAGGACTCTTNCCTTCTCTTATTTTCAAAATGAACATCATGGATANTGACAAGGCAGCAGCCTTATAAAACACCGGAGAATTTCAGCAACTTTGTATGCTTTTAAGAATTTGGAAAGCCTTTGAAGCTTTCCACTGATTAGATCATGGATACCAATTCAAGAAACTGGAGATGTGCAGGAAAGGCCCAATTGCTTGTAACTTCTGCTCTTCTTTTATTGCAGAACATTCTGATCATCCCTGAGATATTTGCAGAGGAAACAAGCTCNGTGAGTCCAACTTTAGTTTGTAATTCTTCTTTAATATATACATATAAATACATGTGAATAATGTTTGTCATTTGAGCACAATCAGTTATTAAATACATGCTTCTAGGTGCATATTGTTTACATGGGAGATAAGATATATCAAAATCCGGAAACTACTAAAAAGTATCACCACAACATGTTGTCTTCACTCCTAGGAAGCAAANAAGCTGCAAAGAATTCATTTCTTTATAGCTATAAGCATGGATTTTCAGGGTTTGCTGCAAGAATGACAAAATCTCAAGCAGAAGCAATAGCACAGTTTCCTGGGGTAGTTTCTGTCATTCTGAACCGCATTCACAAACTCCACACAACCAGAAGCTGGGACTTCATTGGGGTCCATCATTCCTCCTCCTCAAAAACTGGATTCACTGAAGGACACTCAGGTGAAGGAACCATCATAGGTGTCATAGACACAGGCATTTGGCCAGAGTCTGCAAGTTTTAATGATGAAGCAATGGGGAAAATCCCATCAAGGTGGAAAGGAGTTTGTCAAGTGGGAGAGCAATTCAACTCCACCAATTGCAACAAAAAGATAATCGGCGCTCGATGGTTCATCAAAGGAATAAATGATCACACTAAGGAACGCATCCATGGAAATGGCACCAATGAATATCTCTCAGCTAGAGATGCTATTGGCCATGGCACTCACACATCTTCCACAGCAGCTGGTTACTTTGTAGGAAATGCAAATTATAGAGGACTTGCTTCTGGTTTAGCCAGAGGAGGAGCACCCTTGGCTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold10335	1	1491	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur010335s00045762.1	PF05922.11	Inhibitor_I9	11	75	7.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.384
SRR1783600	control	12.568
SRR1783602	moderate drought stress	8.987
SRR1811619	moderate drought stress	9.018

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.214
DRR006520	Root Summer glycyrrhizin high producing strain	8.692
DRR006521	Root Winter glycyrrhizin high producing strain	0.663
DRR006522	Root Winter glycyrrhizin high producing strain	0.689
DRR006523	Root Summer glycyrrhizin low producing strain	6.065
DRR006524	Root Summer glycyrrhizin low producing strain	6.147
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.363
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.410

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.746
SRR2868004	Drought Stress (root)	12.510
SRR2967015	Control (root)	14.185

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.149
SRR9715740	Leaf	1.785
SRR9715741	Leaf	2.211
SRR9715739	Root	0.357
SRR9715742	Root	4.090
SRR9715743	Root	3.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.128
SRR8749028	MeJA induced 9h	0.039
SRR8749029	MeJA induced 9h	0.073
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.423
SRR8749032	Uninduced	0.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.111
SRR8400027	Control - Root	11.431