Gene detail information of Glyur010332s00045571 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23160.1 | 7.00E-43 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 |
| NR | CAN71812.1 | 4.64E-102 | hypothetical protein VITISV_037409 [Vitis vinifera] |
| Swissprot | tr|P10978|POLX_TOBAC | 3.00E-29 | Endonuclease |
| trEMBL | tr|A5AYD3|A5AYD3_VITVI | 2.00E-102 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN71812.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold10332 | 55 | 1473 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur010332s00045571.1 | PF07727.9 | RVT_2 | 56 | 102 | 4.80E-15 |
| Glyur010332s00045571.1 | PF07727.9 | RVT_2 | 103 | 234 | 1.60E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.216 |
| SRR1783600 | control | 0.235 |
| SRR1783602 | moderate drought stress | 0.228 |
| SRR1811619 | moderate drought stress | 0.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.323 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.048 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.161 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.171 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.259 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.423 |
| SRR2868004 | Drought Stress (root) | 1.939 |
| SRR2967015 | Control (root) | 0.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.296 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.963 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.384 |
| SRR9715743 | Root | 0.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.227 |
| SRR8749028 | MeJA induced 9h | 8.600 |
| SRR8749029 | MeJA induced 9h | 4.037 |
| SRR8749030 | Uninduced | 3.639 |
| SRR8749031 | Uninduced | 4.502 |
| SRR8749032 | Uninduced | 3.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.802 |
| SRR8400027 | Control - Root | 1.102 |