Gene detail information of Glyur010166s00045774 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30290.2 | 1.00E-133 | VACUOLAR SORTING RECEPTOR 2 |
| NR | XP_004492565.1 | 0 | PREDICTED: vacuolar-sorting receptor 1-like [Cicer arietinum] |
| Swissprot | tr|O22925|VSR2_ARATH | 4.00E-163 | Vacuolar-sorting receptor 2 (Precursor) |
| trEMBL | tr|G7KY61|G7KY61_MEDTR | 0 | Vacuolar sorting receptor {ECO:0000313|EMBL:AES79849.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold10166 | 46 | 1263 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur010166s00045774.1 | PF02225.17 | PA | 1 | 60 | 3.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.190 |
| SRR1783600 | control | 28.761 |
| SRR1783602 | moderate drought stress | 25.699 |
| SRR1811619 | moderate drought stress | 24.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.109 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.200 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.569 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.309 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.067 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.135 |
| SRR2868004 | Drought Stress (root) | 14.011 |
| SRR2967015 | Control (root) | 12.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.335 |
| SRR9715740 | Leaf | 12.613 |
| SRR9715741 | Leaf | 15.527 |
| SRR9715739 | Root | 23.645 |
| SRR9715742 | Root | 52.959 |
| SRR9715743 | Root | 46.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.451 |
| SRR8749028 | MeJA induced 9h | 3.252 |
| SRR8749029 | MeJA induced 9h | 0.656 |
| SRR8749030 | Uninduced | 2.829 |
| SRR8749031 | Uninduced | 3.057 |
| SRR8749032 | Uninduced | 2.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.690 |
| SRR8400027 | Control - Root | 22.948 |