Gene detail information of Glyur009948s00047362 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11170.1 | 2.00E-37 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_004515062.1 | 1.41E-80 | PREDICTED: TMV resistance protein N-like [Cicer arietinum] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 7.00E-44 | TMV resistance protein N |
| trEMBL | tr|G7KKS2|G7KKS2_MEDTR | 3.00E-75 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:AES76418.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09948 | 412 | 990 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009948s00047362.1 | PF01582.15 | TIR | 21 | 153 | 1.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.641 |
| SRR1783600 | control | 3.250 |
| SRR1783602 | moderate drought stress | 1.898 |
| SRR1811619 | moderate drought stress | 1.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.375 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.444 |
| SRR2868004 | Drought Stress (root) | 3.795 |
| SRR2967015 | Control (root) | 2.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.230 |
| SRR9715740 | Leaf | 1.119 |
| SRR9715741 | Leaf | 0.339 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.053 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.278 |
| SRR8749028 | MeJA induced 9h | 0.823 |
| SRR8749029 | MeJA induced 9h | 0.684 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 1.125 |
| SRR8749032 | Uninduced | 0.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.203 |
| SRR8400027 | Control - Root | 2.514 |