Gene detail information of Glyur009802s00045898 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48670.2 | 4.00E-13 | XH/XS domain-containing protein |
| NR | XP_003538408.1 | 8.92E-34 | PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8VZ79|IDN2_ARATH | 1.00E-21 | Protein INVOLVED IN DE NOVO 2 {ECO:0000303|PubMed:19915591} |
| trEMBL | tr|I1LMF4|I1LMF4_SOYBN | 3.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G34010.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09802 | 263 | 1628 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.473 |
| SRR1783600 | control | 3.163 |
| SRR1783602 | moderate drought stress | 0.399 |
| SRR1811619 | moderate drought stress | 0.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.052 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.451 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.488 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.324 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.490 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.917 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.283 |
| SRR2868004 | Drought Stress (root) | 0.395 |
| SRR2967015 | Control (root) | 0.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.374 |
| SRR9715740 | Leaf | 0.043 |
| SRR9715741 | Leaf | 0.331 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.226 |
| SRR9715743 | Root | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.144 |
| SRR8749028 | MeJA induced 9h | 0.097 |
| SRR8749029 | MeJA induced 9h | 0.176 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.491 |
| SRR8400027 | Control - Root | 1.278 |