Gene detail information of Glyur009766s00047671 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15210.1 | 9.00E-32 | homeobox protein 30 |
| NR | XP_003517792.1 | 4.47E-66 | PREDICTED: transcription factor HB29-like [Glycine max] |
| Swissprot | tr|Q9LXG0|ZHD8_ARATH | 2.00E-48 | Zinc-finger homeodomain protein 8 |
| trEMBL | tr|I1J5R0|I1J5R0_SOYBN | 2.00E-66 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G05810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09766 | 666 | 1451 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009766s00047671.1 | PF04770.7 | ZF-HD_dimer | 50 | 101 | 4.40E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.241 |
| SRR1783600 | control | 2.376 |
| SRR1783602 | moderate drought stress | 7.646 |
| SRR1811619 | moderate drought stress | 8.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.788 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.463 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.539 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 48.734 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.784 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.286 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.412 |
| SRR2868004 | Drought Stress (root) | 0.516 |
| SRR2967015 | Control (root) | 0.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.476 |
| SRR9715740 | Leaf | 3.435 |
| SRR9715741 | Leaf | 2.035 |
| SRR9715739 | Root | 0.988 |
| SRR9715742 | Root | 1.920 |
| SRR9715743 | Root | 1.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.328 |
| SRR8749028 | MeJA induced 9h | 1.147 |
| SRR8749029 | MeJA induced 9h | 5.339 |
| SRR8749030 | Uninduced | 6.409 |
| SRR8749031 | Uninduced | 3.635 |
| SRR8749032 | Uninduced | 8.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.837 |
| SRR8400027 | Control - Root | 1.728 |