Gene detail

Gene detail information of Glyur009694s00047249

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46530.1	1.00E-41	NB-ARC domain-containing disease resistance protein
NR	KEH30519.1	4.31E-163	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	NP_485676.1	4.00E-09	regulatory protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q9M667\|RPP13_ARATH	3.00E-53	Disease resistance protein RPP13
trEMBL	tr\|A0A072UL87\|A0A072UL87_MEDTR	2.00E-163	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:KEH30519.1}

Sequence

Transcript Sequence

>Glyur009694s00047249.1
CAGGAAACGTCCTTGACCCCAAGTCAGGTCTTGCTGAATTATTGAGGGCGCAGGCAATTCCCTTCTACTTTCCTCGCTATTTCCATTCCCAACTTAGAAAAGAAACACTCAAAGAAGGAGGAAGAGATTTATATAACTCGATCCGTTTTCCCTTATTGCGACAACAGAAATTCCATCCCATAACAAGCAACACCAAACAACAGTTTCTTAATTTCCCCTAACCAACCATCACTCATCAGTTTCTTGTAATCACTCTTACAAACAAACAGCTACATAGTAATGGCAGATAGTGTGGTTTCCTTTCTTTTGGAACACTTGTCGGAGTTGCTGTCACGTGAAGCCAAGTTGCTGTGTGGCGTGGAGGACAGAGTGAGGTCCCTATACAACGAGCTCGAAATCATAAACGCCTACCTCACAACAATAACAAACTCCGAGAAGAGCAAGAAGAGATCAGAGACGGAACAAAGAGTCGTGAGTCAGATACGGGATGTCGCACACGTGGTAGAGGATGTCATCGACACATTTGTCGCCAACGTCGCCCTCCACAACAGGAGAACCAAGCTCGGAAGATTGCTCCACGGCNTCAACCACGCAATGTCCCTCCACGATGTTGCCCAGAAAATAGATAAAATCAAAACGACNATCAGCGAGATCCACGAAAACAGGGTCAAATACGACGACAGCGAAGGAAGCGGCGGCNGTGATCNGAGAGAAGAGGAGGTGGAGGAGAGGGCGCGGTCACTGCACAGGCTGAGAAGGAACGTGGAGGAGGAGGATGTGGTGGGCTTTGTCCAAGAATCAAAGGTGGTCGTCGACCGGCTCTTGGAGGGAGGGTCAGATTCGGGAACGCGNNGCAGCGTCGTTTCGATCATTGGCATGGGTGGATTGGGAAAAACCACCCTCGCACGAAAGGTCTATAACAGCAGAGAGGTGAAGAAACACTTTGATTGCCGCGCGTGGGTCTACGTGTCAAACGAATGTAGGGCCAGGGAGCTTTTGCTTGGCCTTCTAAAGCATTTGATGCCAAGCCTTGAATATAAATGTAGAAGAAACAAGAACAAGAAGGGTAAGAAAGCAGACAAGCCTAGAGATTTTTCTAGCTTGAATGAGGATGAGTTGAAGAAAAGTGTGCGGGAATGCTTGGTGAGGAAAAGGTATCTAGTAGTCCTCGATGACTTGTGGAGAAAGCAAGACTGGGATGAGGTACAAGATGCTTTTCCCGATAACAATAAAGGCGGCAGAATATTGATCACTAGTCGTATCAAAGAGGTGGCCTCACACATTAGCCGAGATCCTCCTTATTGCCTTCAATTTCTCACTGAAGAACACAGCTGGGAGCTCTTCTCCAGGAAAGTGTTCCGCGGAGAAGAGTACCCTTGTGATCTTGACCCTCTTGGTAGACAAATGGTTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold09694	3	1415	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur009694s00047249.1	PF00931.17	NB-ARC	177	378	2.00E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.410
SRR1783600	control	2.532
SRR1783602	moderate drought stress	1.169
SRR1811619	moderate drought stress	1.093

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	129.352
DRR006520	Root Summer glycyrrhizin high producing strain	126.760
DRR006521	Root Winter glycyrrhizin high producing strain	0.912
DRR006522	Root Winter glycyrrhizin high producing strain	0.846
DRR006523	Root Summer glycyrrhizin low producing strain	104.119
DRR006524	Root Summer glycyrrhizin low producing strain	102.847
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.896
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.921
SRR2868004	Drought Stress (root)	7.118
SRR2967015	Control (root)	54.368

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.908
SRR9715740	Leaf	13.346
SRR9715741	Leaf	3.237
SRR9715739	Root	20.298
SRR9715742	Root	93.502
SRR9715743	Root	74.371

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.478
SRR8749028	MeJA induced 9h	0.119
SRR8749029	MeJA induced 9h	0.408
SRR8749030	Uninduced	0.090
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.626
SRR8400027	Control - Root	65.665