Gene detail information of Glyur009543s00046900 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28150.1 | 8.00E-79 | TRICHOME BIREFRINGENCE-LIKE 22 |
| NR | XP_007151116.1 | 1.45E-147 | hypothetical protein PHAVU_004G019300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LRS2|TBL22_ARATH | 4.00E-95 | Protein ALTERED XYLOGLUCAN 4-like |
| trEMBL | tr|V7C1D3|V7C1D3_PHAVU | 5.00E-148 | Uncharacterized protein {ECO:0000313|EMBL:ESW23110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09543 | 471 | 1641 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009543s00046900.1 | PF13839.1 | PC-Esterase | 19 | 270 | 2.30E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.086 |
| SRR1783600 | control | 0.087 |
| SRR1783602 | moderate drought stress | 0.090 |
| SRR1811619 | moderate drought stress | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.257 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.255 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.387 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.050 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.657 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.017 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.889 |
| SRR2868004 | Drought Stress (root) | 0.362 |
| SRR2967015 | Control (root) | 0.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.396 |
| SRR9715740 | Leaf | 3.558 |
| SRR9715741 | Leaf | 3.093 |
| SRR9715739 | Root | 0.175 |
| SRR9715742 | Root | 0.384 |
| SRR9715743 | Root | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.341 |
| SRR8749028 | MeJA induced 9h | 8.577 |
| SRR8749029 | MeJA induced 9h | 5.914 |
| SRR8749030 | Uninduced | 10.999 |
| SRR8749031 | Uninduced | 5.088 |
| SRR8749032 | Uninduced | 0.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.239 |
| SRR8400027 | Control - Root | 0.401 |