Gene detail information of Glyur009394s00047793 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59540.1 | 1.00E-14 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | AFK46975.1 | 1.64E-35 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LTH7|ACH12_ARATH | 4.00E-17 | 1-aminocyclopropane-1-carboxylate oxidase homolog 12 |
| trEMBL | tr|I3T383|I3T383_LOTJA | 6.00E-36 | Uncharacterized protein {ECO:0000313|EMBL:AFK46975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09394 | 1213 | 1422 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.941 |
| SRR1783600 | control | 1.046 |
| SRR1783602 | moderate drought stress | 0.844 |
| SRR1811619 | moderate drought stress | 0.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.128 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.143 |
| SRR2868004 | Drought Stress (root) | 71.551 |
| SRR2967015 | Control (root) | 93.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.773 |
| SRR9715740 | Leaf | 10.383 |
| SRR9715741 | Leaf | 59.653 |
| SRR9715739 | Root | 1.004 |
| SRR9715742 | Root | 2.122 |
| SRR9715743 | Root | 2.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.976 |
| SRR8749028 | MeJA induced 9h | 36.050 |
| SRR8749029 | MeJA induced 9h | 19.594 |
| SRR8749030 | Uninduced | 245.405 |
| SRR8749031 | Uninduced | 223.725 |
| SRR8749032 | Uninduced | 345.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.648 |
| SRR8400027 | Control - Root | 14.570 |