Gene detail information of Glyur009330s00046162 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25290.1 | 2.00E-39 | DNA photolyases;DNA photolyases |
| NR | XP_004514512.1 | 3.98E-84 | PREDICTED: uncharacterized protein LOC101504892 isoform X1 [Cicer arietinum] |
| COG | YP_007323649.1 | 5.00E-11 | cryptochrome, DASH family [Fibrella aestuarina BUZ 2] |
| Swissprot | tr|Q38JU2|CRYD_SOLLC | 1.00E-09 | Cryptochrome DASH, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|A0A072UU84|A0A072UU84_MEDTR | 3.00E-79 | Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KEH29415.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09330 | 174 | 1372 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009330s00046162.1 | PF00875.13 | DNA_photolyase | 39 | 115 | 2.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.090 |
| SRR1783600 | control | 3.181 |
| SRR1783602 | moderate drought stress | 3.932 |
| SRR1811619 | moderate drought stress | 4.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.358 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.498 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.715 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.429 |
| SRR2868004 | Drought Stress (root) | 2.937 |
| SRR2967015 | Control (root) | 3.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.836 |
| SRR9715740 | Leaf | 17.052 |
| SRR9715741 | Leaf | 18.608 |
| SRR9715739 | Root | 0.921 |
| SRR9715742 | Root | 2.581 |
| SRR9715743 | Root | 3.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.405 |
| SRR8749028 | MeJA induced 9h | 0.808 |
| SRR8749029 | MeJA induced 9h | 0.446 |
| SRR8749030 | Uninduced | 0.272 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.456 |
| SRR8400027 | Control - Root | 4.298 |