Gene detail information of Glyur009329s00047749 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72900.1 | 1.00E-34 | Toll-Interleukin-Resistance (TIR) domain-containing protein |
| NR | AES76331.2 | 1.25E-75 | functional resistance protein KR1, putative [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 7.00E-47 | TMV resistance protein N |
| trEMBL | tr|G7KK77|G7KK77_MEDTR | 5.00E-76 | Functional resistance protein KR1, putative {ECO:0000313|EMBL:AES76331.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09329 | 1193 | 1702 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009329s00047749.1 | PF01582.15 | TIR | 24 | 159 | 5.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.010 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.331 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.488 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.499 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.864 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.066 |
| SRR2868004 | Drought Stress (root) | 5.127 |
| SRR2967015 | Control (root) | 5.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.724 |
| SRR9715740 | Leaf | 2.340 |
| SRR9715741 | Leaf | 3.487 |
| SRR9715739 | Root | 2.505 |
| SRR9715742 | Root | 11.283 |
| SRR9715743 | Root | 10.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.138 |
| SRR8749028 | MeJA induced 9h | 4.111 |
| SRR8749029 | MeJA induced 9h | 2.463 |
| SRR8749030 | Uninduced | 1.132 |
| SRR8749031 | Uninduced | 0.408 |
| SRR8749032 | Uninduced | 0.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.851 |
| SRR8400027 | Control - Root | 7.568 |