Gene detail information of Glyur009328s00045564 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39530.1 | 2.00E-13 | Uncharacterised protein family (UPF0497) |
| NR | XP_004492135.1 | 6.84E-48 | PREDICTED: CASP-like protein 12-like [Cicer arietinum] |
| Swissprot | tr|C6T1Z6|CSPLC_SOYBN | 7.00E-41 | CASP-like protein 4D1 |
| trEMBL | tr|G7KXU9|G7KXU9_MEDTR | 9.00E-46 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09328 | 1400 | 1797 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009328s00045564.1 | PF04535.7 | DUF588 | 4 | 80 | 4.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.008 |
| SRR1783600 | control | 0.125 |
| SRR1783602 | moderate drought stress | 0.131 |
| SRR1811619 | moderate drought stress | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.502 |
| SRR2868004 | Drought Stress (root) | 60.750 |
| SRR2967015 | Control (root) | 46.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.535 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.716 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.407 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 1.356 |
| SRR8749030 | Uninduced | 0.280 |
| SRR8749031 | Uninduced | 0.211 |
| SRR8749032 | Uninduced | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.538 |
| SRR8400027 | Control - Root | 3.449 |