Gene detail

Gene detail information of Glyur009275s00046689

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06400.1	2.00E-12	chromatin-remodeling protein 11
NR	ADE77209.1	1.80E-13	unknown [Picea sitchensis]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	1.00E-14	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|D5ACE0\|D5ACE0_PICSI	7.00E-14	Putative uncharacterized protein {ECO:0000313\|EMBL:ADE77209.1}

Sequence

Transcript Sequence

>Glyur009275s00046689.1
GGAGAAGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCCATTGGGAAGAAGTTGGATTGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTAGAACATCACCCTTGTTTAGATTTGTTTTGGTTTATCAAACTTTTCTGATTTGTTTTGGTTTATCAAACTTTTCTGACTTGACTTGATCTTTGTCATCTTTACAGGTACTGTCATTCCTTTGCTCGAAGCTTCTTGTTACATGAAAACTTTGTTTTAACACTTTCATCTACCTTTTGGAAAATGTTTTAGAAAACGTTTTTCCTTACATCAAATTTTTATCACTCTTTAAACTTTTATACTCTTGAAATACATTTTTTTTTAAAATATTTCTATTCACTTTTAGTTACTTATTTTTAAAGTGTCTTATTTTGGTCTCAATTTCTAGAAATATAATACTGTTAGTCACCCGTGTGCCATAGGAAGGGAGGGAGGAGAGAAGGGGGAGAGAGGGAGGGGAAGAGTTGAAGTGGGAAAAAGGAGGGGTAGGGGGGAGAGGAATTGGTTGCCAAGGAGTAGGGGGAGAGGAAATATTTCTAGAAAAGAATGACCAAAATGAGACGTTTAAAAAATGAGATATCAAAATTCTTTTAATTTTTTTTTTCTATTTTCTGGAAACTCGTTCATTCCATGAAAACTTTTCAAAAAGCTCTTTTTCATTCCATGAAATTTTTTCGAAAAACTCTATACTCCTTAAATTTTTTTACTCTAAAAATGGAACCGGATGCCGTCGATAAAGAAAGCATGCTCGAAGGTTGAAGTCAGATGTCGAGAAAGGGTTCCACCAAAAAAAGAAACCATTCTTAAAGTAGGATGTCACAAGTGCAGAAACAGTATTATAGAGCACTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCTTGAATATTATAGCCTATGCAACTACGCAAATGTTGTAATAATGAATTAATTTTTGAATGAGATAGGAAACGATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold09275	2	1226	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006338 chromatin remodeling

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur009275s00046689.1	PF09111.5	SLIDE	1	35	1.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.567
SRR1783600	control	5.646
SRR1783602	moderate drought stress	10.190
SRR1811619	moderate drought stress	15.502

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.480
DRR006520	Root Summer glycyrrhizin high producing strain	5.956
DRR006521	Root Winter glycyrrhizin high producing strain	16.368
DRR006522	Root Winter glycyrrhizin high producing strain	16.213
DRR006523	Root Summer glycyrrhizin low producing strain	9.232
DRR006524	Root Summer glycyrrhizin low producing strain	10.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.644
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.090
SRR2868004	Drought Stress (root)	2.048
SRR2967015	Control (root)	2.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.480
SRR9715740	Leaf	6.893
SRR9715741	Leaf	10.776
SRR9715739	Root	0.368
SRR9715742	Root	4.068
SRR9715743	Root	2.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.379
SRR8749028	MeJA induced 9h	1.341
SRR8749029	MeJA induced 9h	0.382
SRR8749030	Uninduced	0.635
SRR8749031	Uninduced	0.567
SRR8749032	Uninduced	0.935

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.216
SRR8400027	Control - Root	47.358