Gene detail information of Glyur009256s00046487.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77120.1 | 1.00E-21 | alcohol dehydrogenase 1 |
| NR | AFK45892.1 | 3.38E-29 | unknown [Lotus japonicus] |
| COG | YP_003147226.1 | 5.00E-15 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069] |
| Swissprot | tr|P13603|ADH1_TRIRP | 4.00E-29 | Alcohol dehydrogenase 1 |
| trEMBL | tr|I3T050|I3T050_LOTJA | 1.00E-29 | Uncharacterized protein {ECO:0000313|EMBL:AFK45892.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09256 | 3 | 1009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18857 | ADH1 | EC:1.1.1.1 | Glycolysis / Gluconeogenesis | map00010 |
| Fatty acid degradation | map00071 | |||
| alpha-Linolenic acid metabolism | map00592 | |||
| Tyrosine metabolism | map00350 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 353.083 |
| SRR1783600 | control | 355.403 |
| SRR1783602 | moderate drought stress | 1878.926 |
| SRR1811619 | moderate drought stress | 1868.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 701.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 674.910 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 744.936 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 726.571 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 779.058 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 766.100 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.191 |
| SRR2868004 | Drought Stress (root) | 0.813 |
| SRR2967015 | Control (root) | 6.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.039 |
| SRR9715740 | Leaf | 0.286 |
| SRR9715741 | Leaf | 0.113 |
| SRR9715739 | Root | 143.062 |
| SRR9715742 | Root | 238.470 |
| SRR9715743 | Root | 204.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.292 |
| SRR8400027 | Control - Root | 107.184 |