Gene detail information of Glyur009102s00047642 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16340.1 | 6.00E-101 | AMP-dependent synthetase and ligase family protein |
| NR | XP_003519307.1 | 1.01E-156 | PREDICTED: probable acyl-activating enzyme 5, peroxisomal-like [Glycine max] |
| COG | YP_002890504.1 | 2.00E-81 | acyl-CoA synthetase [Thauera sp. MZ1T] |
| Swissprot | tr|Q9FFE9|AAE6_ARATH | 3.00E-123 | Probable acyl-activating enzyme 6 |
| trEMBL | tr|I1JHQ7|I1JHQ7_SOYBN | 4.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09102 | 1166 | 1963 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009102s00047642.1 | PF00501.23 | AMP-binding | 21 | 264 | 4.90E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.361 |
| SRR1783600 | control | 12.323 |
| SRR1783602 | moderate drought stress | 22.965 |
| SRR1811619 | moderate drought stress | 21.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.687 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.570 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.968 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.126 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.554 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.777 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.786 |
| SRR2868004 | Drought Stress (root) | 36.233 |
| SRR2967015 | Control (root) | 37.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.487 |
| SRR9715740 | Leaf | 48.294 |
| SRR9715741 | Leaf | 71.111 |
| SRR9715739 | Root | 66.331 |
| SRR9715742 | Root | 69.712 |
| SRR9715743 | Root | 61.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.373 |
| SRR8749028 | MeJA induced 9h | 89.008 |
| SRR8749029 | MeJA induced 9h | 81.158 |
| SRR8749030 | Uninduced | 40.880 |
| SRR8749031 | Uninduced | 78.933 |
| SRR8749032 | Uninduced | 136.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.697 |
| SRR8400027 | Control - Root | 14.839 |