Gene detail information of Glyur009075s00047255 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07040.1 | 3.00E-59 | NB-ARC domain-containing disease resistance protein |
| NR | XP_004499780.1 | 0 | PREDICTED: disease resistance protein RPM1-like [Cicer arietinum] |
| COG | YP_001522505.1 | 1.00E-07 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q39214|RPM1_ARATH | 5.00E-81 | Disease resistance protein RPM1 |
| trEMBL | tr|A0A067XSL3|A0A067XSL3_CICAR | 0 | CC-NBS-LRR disease resistance protein {ECO:0000313|EMBL:AGT75403.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09075 | 86 | 2004 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009075s00047255.1 | PF00931.17 | NB-ARC | 192 | 478 | 7.80E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.004 |
| SRR1783600 | control | 1.006 |
| SRR1783602 | moderate drought stress | 1.747 |
| SRR1811619 | moderate drought stress | 1.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.304 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.290 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.744 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.190 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.288 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.345 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.741 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.601 |
| SRR2868004 | Drought Stress (root) | 1.631 |
| SRR2967015 | Control (root) | 1.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.408 |
| SRR9715740 | Leaf | 6.188 |
| SRR9715741 | Leaf | 8.308 |
| SRR9715739 | Root | 0.121 |
| SRR9715742 | Root | 2.175 |
| SRR9715743 | Root | 2.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.758 |
| SRR8749028 | MeJA induced 9h | 2.980 |
| SRR8749029 | MeJA induced 9h | 0.349 |
| SRR8749030 | Uninduced | 1.006 |
| SRR8749031 | Uninduced | 0.555 |
| SRR8749032 | Uninduced | 0.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.568 |
| SRR8400027 | Control - Root | 3.919 |