Gene detail information of Glyur009008s00045230 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55230.1 | 3.00E-92 | Family of unknown function (DUF716) |
| NR | XP_004486117.1 | 5.51E-156 | PREDICTED: transmembrane protein 45B-like [Cicer arietinum] |
| trEMBL | tr|A2Q224|A2Q224_MEDTR | 3.00E-148 | T1.3 protein {ECO:0000313|EMBL:AES64376.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09008 | 1221 | 2108 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009008s00045230.1 | PF04819.7 | DUF716 | 90 | 227 | 6.50E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.581 |
| SRR1783600 | control | 20.123 |
| SRR1783602 | moderate drought stress | 17.056 |
| SRR1811619 | moderate drought stress | 16.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.316 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.268 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.146 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.918 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.640 |
| SRR2868004 | Drought Stress (root) | 58.523 |
| SRR2967015 | Control (root) | 17.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.532 |
| SRR9715740 | Leaf | 11.206 |
| SRR9715741 | Leaf | 27.736 |
| SRR9715739 | Root | 64.815 |
| SRR9715742 | Root | 16.599 |
| SRR9715743 | Root | 22.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.747 |
| SRR8749028 | MeJA induced 9h | 247.985 |
| SRR8749029 | MeJA induced 9h | 293.690 |
| SRR8749030 | Uninduced | 250.689 |
| SRR8749031 | Uninduced | 1792.660 |
| SRR8749032 | Uninduced | 771.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.778 |
| SRR8400027 | Control - Root | 14.471 |