Gene detail

Gene detail information of Glyur008943s00046621.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63570.1	2.00E-88	glutamate-1-semialdehyde-2,1-aminomutase
NR	XP_010545941.1	1.32E-108	PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Tarenaya hassleriana]
COG	YP_007060176.1	2.00E-93	glutamate-1-semialdehyde-2,1-aminomutase [Synechococcus sp. PCC 6312]
Swissprot	tr\|P45621\|GSA_SOYBN	2.00E-108	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (Precursor)
trEMBL	tr\|G4W9I5\|G4W9I5_MEDTR	1.00E-108	Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313\|EMBL:AES74310.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08943	60	1801	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01845	hemL	EC:5.4.3.8	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008943s00046621.1	PF00202.16	Aminotran_3	86	196	2.90E-23

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.756
SRR1783600	control	0.719
SRR1783602	moderate drought stress	0.424
SRR1811619	moderate drought stress	0.385

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.196
DRR006520	Root Summer glycyrrhizin high producing strain	1.647
DRR006521	Root Winter glycyrrhizin high producing strain	0.086
DRR006522	Root Winter glycyrrhizin high producing strain	0.083
DRR006523	Root Summer glycyrrhizin low producing strain	0.434
DRR006524	Root Summer glycyrrhizin low producing strain	0.352
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.415

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.242
SRR2868004	Drought Stress (root)	2.745
SRR2967015	Control (root)	4.408

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.025
SRR9715739	Root	0.000
SRR9715742	Root	0.292
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.110
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.016
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.062

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.357
SRR8400027	Control - Root	0.234