Gene detail information of Glyur008935s00047863 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18550.1 | 1.00E-58 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_004505133.1 | 2.73E-99 | PREDICTED: phospholipase A1-IIgamma-like isoform X2 [Cicer arietinum] |
| COG | YP_008088318.1 | 6.00E-08 | Predicted lipase [Chthonomonas calidirosea T49] |
| Swissprot | tr|O49523|DSEL_ARATH | 4.00E-70 | Phospholipase A1-IIgamma |
| trEMBL | tr|V7C8W8|V7C8W8_PHAVU | 4.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:ESW25700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08935 | 1307 | 1861 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008935s00047863.1 | PF01764.20 | Lipase_3 | 2 | 95 | 8.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.132 |
| SRR1783600 | control | 0.132 |
| SRR1783602 | moderate drought stress | 0.137 |
| SRR1811619 | moderate drought stress | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.205 |
| SRR2868004 | Drought Stress (root) | 45.120 |
| SRR2967015 | Control (root) | 29.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.831 |
| SRR8749028 | MeJA induced 9h | 1.721 |
| SRR8749029 | MeJA induced 9h | 0.109 |
| SRR8749030 | Uninduced | 14.080 |
| SRR8749031 | Uninduced | 33.087 |
| SRR8749032 | Uninduced | 3.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.057 |
| SRR8400027 | Control - Root | 1.430 |