Gene detail

Gene detail information of Glyur008871s00047049.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60900.1	9.00E-95	receptor-like protein kinase 1
NR	XP_006386090.1	2.47E-152	hypothetical protein POPTR_0003s220001g, partial [Populus trichocarpa]
COG	YP_003372407.1	9.00E-23	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q39202\|RLK1_ARATH	5.00E-116	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor)
trEMBL	tr\|U5GRL9\|U5GRL9_POPTR	9.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:ERP63887.1} (Fragment)

Sequence

Transcript Sequence

>Glyur008871s00047049.1
AGGAATTGGTGCAGGCAATCCTGCTTGGGTGATTGTTTATGCGCTGCTGCCGTTTTCAATGATCCGGCAGTTCGGGCTGCTGATCTTCTCTTTATAGTGGTGGTAGCTTGTTTAGCTTCTGCATCATCCCGGTTTGGCCATAAGGTGGTGGAGCCTAATTCCCAACTCATGACTGACATGAATCTTACAAGTTACACTTATCAAGAGTTAAGCAGAGCAACAAATGGTTTCAATGAAGAACTAGGTCACGGTGCATTCGCAACGGTTTACAAAGGAGTTATCTCTGGAGTCGATGATAACAACCACCTTGTTGTTGCTGTTAAGAAGTTGGATGCCAAGTTCAGAGAAACAGATGAAGAATTTAAAGCAGAAGTGNTTGCAATTGGTCAAACAAATCACAGAAACCTGGTCCAACTCTTGGGATTCTGTGAGGAAGGGGAGCACAAGCTACTAGTATATGAATTCATGAGCAATGGATCGTTAGCAGGGTTGCTTTTTGGNTCACAGAGGCCAAGATGGTACAAAAGAAAGGAAATTGCATTGGAAATAGCAAGGGGACTCTTTTACCTGCACGATGAGTGTCGCAACCAGACCATACATTGTGACATCAAGCCCCAAAACATCCTTCTTGACAGCTCCTACACTGCAAGAATCTCAGACTTCGGTTTAGCCAAGCTCTTGAAGCTCGACCAGACCCGAACCGCCACTGCAATCAGAGNAACCAAAGGATATGTTGCTCCTGAATGGTTCAGGAGTGTTCCTGTCAATGTGAAGGTGGATGTTTACAGCTACGGGATTCTGTTGCTAGAGCTCATATGCTGTAAGAAGAACTTCGATGCAAATGCTGAGAATGATGACATGATGATATTGGCGGATTTGGCATATGATTCCTTCAGGGATGGGAAGTTGAGTTTGCTGGTGGAGGATGATGTGGAAGCGTTGGATGACATGAAGAAGGTGGAAAGGTTTGTGATGACTGCCATATGGTGTATTCAGGAGGATCCATCACTCAGACCAACCATGAAGAAAGTAATACTCATGCTNGAAGGTTCTGTGGACGTGCCTATTCCCCCTGATCCAGCCTCTTTATATGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08871	3	1251	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008871s00047049.1	PF00069.20	Pkinase	78	344	4.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.027
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.148
DRR006520	Root Summer glycyrrhizin high producing strain	0.238
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.083
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.541
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.244
SRR9715740	Leaf	13.041
SRR9715741	Leaf	27.163
SRR9715739	Root	0.023
SRR9715742	Root	0.056
SRR9715743	Root	0.307

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.030
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.523
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.134
SRR8400027	Control - Root	0.235