Gene detail information of Glyur008866s00047708 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47550.1 | 6.00E-20 | Cystatin/monellin superfamily protein |
| NR | XP_003610558.1 | 2.68E-24 | Cysteine proteinase inhibitor [Medicago truncatula] |
| Swissprot | tr|Q41916|CYT5_ARATH | 2.00E-24 | Cysteine proteinase inhibitor 5 (Precursor) |
| trEMBL | tr|G7JLQ2|G7JLQ2_MEDTR | 1.00E-24 | Phloem filament protein PP1 {ECO:0000313|EMBL:AES92755.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08866 | 283 | 618 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008866s00047708.1 | PF00031.16 | Cystatin | 22 | 78 | 6.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.206 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 68.114 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.904 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.393 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 101.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 93.189 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.208 |
| SRR2868004 | Drought Stress (root) | 37.287 |
| SRR2967015 | Control (root) | 27.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |