Gene detail information of Glyur008776s00045098 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03070.1 | 2.00E-06 | mediator subunit 8 |
| NR | KDO43970.1 | 1.09E-34 | hypothetical protein CISIN_1g008451mg [Citrus sinensis] |
| Swissprot | tr|Q4V3C1|MED8_ARATH | 6.00E-13 | Mediator of RNA polymerase II transcription subunit 8 |
| trEMBL | tr|A0A067DQX3|A0A067DQX3_CITSI | 4.00E-35 | Uncharacterized protein {ECO:0000313|EMBL:KDO43970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08776 | 326 | 1310 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.243 |
| SRR1783600 | control | 56.084 |
| SRR1783602 | moderate drought stress | 86.246 |
| SRR1811619 | moderate drought stress | 80.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.222 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.234 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.400 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.494 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.110 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.336 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.171 |
| SRR2868004 | Drought Stress (root) | 46.855 |
| SRR2967015 | Control (root) | 44.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.986 |
| SRR9715740 | Leaf | 24.543 |
| SRR9715741 | Leaf | 43.116 |
| SRR9715739 | Root | 7.739 |
| SRR9715742 | Root | 27.303 |
| SRR9715743 | Root | 18.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 91.900 |
| SRR8749028 | MeJA induced 9h | 32.251 |
| SRR8749029 | MeJA induced 9h | 88.567 |
| SRR8749030 | Uninduced | 21.218 |
| SRR8749031 | Uninduced | 14.166 |
| SRR8749032 | Uninduced | 26.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.158 |
| SRR8400027 | Control - Root | 30.412 |