Gene detail information of Glyur008756s00047698 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21280.1 | 2.00E-09 | |
| NR | XP_010250373.1 | 3.28E-41 | PREDICTED: uncharacterized protein LOC104592631 [Nelumbo nucifera] |
| trEMBL | tr|A0A068VMP0|A0A068VMP0_COFCA | 1.00E-39 | Coffea canephora DH200=94 genomic scaffold, scaffold_7498 {ECO:0000313|EMBL:CDP21887.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08756 | 960 | 1607 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008756s00047698.1 | PF14244.1 | UBN2_3 | 1 | 89 | 3.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.400 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.172 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.577 |
| SRR2868004 | Drought Stress (root) | 5.564 |
| SRR2967015 | Control (root) | 2.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.528 |
| SRR8749028 | MeJA induced 9h | 16.111 |
| SRR8749029 | MeJA induced 9h | 7.177 |
| SRR8749030 | Uninduced | 62.932 |
| SRR8749031 | Uninduced | 116.132 |
| SRR8749032 | Uninduced | 24.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.025 |
| SRR8400027 | Control - Root | 0.045 |