Gene detail information of Glyur008750s00047747.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05460.1 | 3.00E-24 | RNI-like superfamily protein |
| NR | XP_004485990.1 | 1.83E-44 | PREDICTED: putative F-box/LRR-repeat protein 23-like [Cicer arietinum] |
| Swissprot | tr|Q9M0U9|SKI19_ARATH | 3.00E-28 | F-box protein SKIP19 |
| trEMBL | tr|V7BSC7|V7BSC7_PHAVU | 4.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:ESW19928.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08750 | 308 | 655 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008750s00047747.1 | PF12937.2 | F-box-like | 24 | 69 | 3.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.966 |
| SRR1783600 | control | 8.176 |
| SRR1783602 | moderate drought stress | 10.962 |
| SRR1811619 | moderate drought stress | 11.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.671 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.626 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.289 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.562 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.504 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.315 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.303 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.913 |
| SRR2868004 | Drought Stress (root) | 9.999 |
| SRR2967015 | Control (root) | 14.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.488 |
| SRR9715740 | Leaf | 2.975 |
| SRR9715741 | Leaf | 2.709 |
| SRR9715739 | Root | 7.385 |
| SRR9715742 | Root | 9.155 |
| SRR9715743 | Root | 5.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.404 |
| SRR8749028 | MeJA induced 9h | 10.464 |
| SRR8749029 | MeJA induced 9h | 5.109 |
| SRR8749030 | Uninduced | 5.781 |
| SRR8749031 | Uninduced | 3.536 |
| SRR8749032 | Uninduced | 4.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.156 |
| SRR8400027 | Control - Root | 6.886 |