Gene detail information of Glyur008715s00047730 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73630.1 | 2.00E-06 | EF hand calcium-binding protein family |
| NR | AES59466.2 | 2.04E-54 | EF-hand pair protein [Medicago truncatula] |
| Swissprot | tr|O82040|POLC7_PHLPR | 6.00E-08 | Polcalcin Phl p 7 |
| trEMBL | tr|G7I3N1|G7I3N1_MEDTR | 8.00E-55 | EF-hand pair protein {ECO:0000313|EMBL:AES59466.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08715 | 1515 | 1802 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008715s00047730.1 | PF13499.1 | EF-hand_7 | 28 | 80 | 6.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.162 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.794 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.230 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.995 |
| SRR2868004 | Drought Stress (root) | 5.506 |
| SRR2967015 | Control (root) | 1.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.259 |
| SRR9715740 | Leaf | 1.234 |
| SRR9715741 | Leaf | 0.362 |
| SRR9715739 | Root | 0.445 |
| SRR9715742 | Root | 0.984 |
| SRR9715743 | Root | 1.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.634 |
| SRR8749028 | MeJA induced 9h | 28.908 |
| SRR8749029 | MeJA induced 9h | 43.335 |
| SRR8749030 | Uninduced | 233.962 |
| SRR8749031 | Uninduced | 428.046 |
| SRR8749032 | Uninduced | 608.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.365 |
| SRR8400027 | Control - Root | 0.249 |