Gene detail information of Glyur008679s00047242 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004489079.1 | 1.31E-99 | PREDICTED: uncharacterized protein LOC101515713 [Cicer arietinum] |
| trEMBL | tr|G7ZV31|G7ZV31_MEDTR | 5.00E-41 | Cellular nucleic acid-binding protein {ECO:0000313|EMBL:AES83069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08679 | 1334 | 2372 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008679s00047242.1 | PF03732.12 | Retrotrans_gag | 74 | 172 | 5.10E-17 |
| Glyur008679s00047242.1 | PF00098.18 | zf-CCHC | 265 | 281 | 8.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.112 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.069 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.583 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.660 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.216 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.056 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.102 |
| SRR2868004 | Drought Stress (root) | 0.048 |
| SRR2967015 | Control (root) | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.012 |