Gene detail information of Glyur008645s00046172 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47500.1 | 3.00E-13 | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain |
| NR | XP_006444423.1 | 1.32E-16 | hypothetical protein CICLE_v10018670mg [Citrus clementina] |
| Swissprot | tr|O81635|ATK4_ARATH | 6.00E-11 | Kinesin-4 |
| trEMBL | tr|A0A067HGD2|A0A067HGD2_CITSI | 5.00E-17 | Kinesin-like protein {ECO:0000256|RuleBase:RU000394} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08645 | 1191 | 2381 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.479 |
| SRR1783600 | control | 0.299 |
| SRR1783602 | moderate drought stress | 1.088 |
| SRR1811619 | moderate drought stress | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.174 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.101 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.871 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.352 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.245 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.105 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.345 |
| SRR9715743 | Root | 0.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.199 |
| SRR8749028 | MeJA induced 9h | 1.827 |
| SRR8749029 | MeJA induced 9h | 0.116 |
| SRR8749030 | Uninduced | 1.064 |
| SRR8749031 | Uninduced | 0.220 |
| SRR8749032 | Uninduced | 0.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.978 |
| SRR8400027 | Control - Root | 5.015 |