Gene detail information of Glyur008627s00046478 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05170.1 | 1.00E-78 | Phosphoglycerate mutase family protein |
| NR | XP_003591056.1 | 5.01E-123 | hypothetical protein MTR_1g082360 [Medicago truncatula] |
| COG | YP_004961561.1 | 3.00E-30 | hypothetical protein SBI_03309 [Streptomyces bingchenggensis BCW-1] |
| Swissprot | tr|Q9MAA2|AT74_ARATH | 1.00E-96 | Phosphoglycerate mutase-like protein AT74 {ECO:0000305} |
| trEMBL | tr|G7I7H1|G7I7H1_MEDTR | 2.00E-123 | Phosphoglycerate/bisphosphoglycerate mutase family protein {ECO:0000313|EMBL:AES61307.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08627 | 505 | 2375 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008627s00046478.1 | PF00300.17 | His_Phos_1 | 59 | 168 | 1.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.603 |
| SRR1783600 | control | 8.067 |
| SRR1783602 | moderate drought stress | 8.363 |
| SRR1811619 | moderate drought stress | 8.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.837 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.176 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.418 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.235 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.113 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.660 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.971 |
| SRR2868004 | Drought Stress (root) | 1.514 |
| SRR2967015 | Control (root) | 2.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.172 |
| SRR9715740 | Leaf | 34.397 |
| SRR9715741 | Leaf | 86.410 |
| SRR9715739 | Root | 65.773 |
| SRR9715742 | Root | 75.129 |
| SRR9715743 | Root | 75.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.491 |
| SRR8749028 | MeJA induced 9h | 0.314 |
| SRR8749029 | MeJA induced 9h | 0.215 |
| SRR8749030 | Uninduced | 0.857 |
| SRR8749031 | Uninduced | 0.513 |
| SRR8749032 | Uninduced | 4.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.893 |
| SRR8400027 | Control - Root | 18.015 |