Gene detail

Gene detail information of Glyur008596s00043067.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16700.1	5.00E-90	Alpha-helical ferredoxin
NR	XP_003636199.1	4.44E-137	NADH-quinone oxidoreductase subunit I [Medicago truncatula]
COG	YP_003550476.1	7.00E-91	NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum marinum IMCC1322]
Swissprot	tr\|P80269\|NDUS8_SOLTU	5.00E-127	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (Precursor)
trEMBL	tr\|G7ZVU9\|G7ZVU9_MEDTR	2.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:AFK45741.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08596	1	2445	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03941	NDUFS8	EC:1.6.5.3 1.6.99.3	Oxidative phosphorylation	map00190
			Oxidative phosphorylation	map00190
			Alzheimer's disease	map05010
			Alzheimer's disease	map05010
			Parkinson's disease	map05012
			Parkinson's disease	map05012
			Huntington's disease	map05016
			Huntington's disease	map05016
			Non-alcoholic fatty liver disease (NAFLD)	map04932
			Non-alcoholic fatty liver disease (NAFLD)	map04932

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0016651 oxidoreductase activity, acting on NAD(P)H

GO:0051536 iron-sulfur cluster binding

GO:0051539 4 iron, 4 sulfur cluster binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008596s00043067.2	PF12838.2	Fer4_7	83	137	1.70E-12

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	43.417
SRR1783600	control	43.529
SRR1783602	moderate drought stress	45.272
SRR1811619	moderate drought stress	44.476

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.031
DRR006520	Root Summer glycyrrhizin high producing strain	72.798
DRR006521	Root Winter glycyrrhizin high producing strain	49.283
DRR006522	Root Winter glycyrrhizin high producing strain	49.879
DRR006523	Root Summer glycyrrhizin low producing strain	62.796
DRR006524	Root Summer glycyrrhizin low producing strain	68.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	52.406

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.728
SRR2868004	Drought Stress (root)	45.219
SRR2967015	Control (root)	37.866

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.073
SRR9715740	Leaf	59.046
SRR9715741	Leaf	73.481
SRR9715739	Root	27.902
SRR9715742	Root	46.332
SRR9715743	Root	42.264

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.442
SRR8749028	MeJA induced 9h	46.863
SRR8749029	MeJA induced 9h	64.060
SRR8749030	Uninduced	55.505
SRR8749031	Uninduced	46.829
SRR8749032	Uninduced	55.872

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.963
SRR8400027	Control - Root	75.598