Gene detail information of Glyur008577s00047026 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52800.1 | 3.00E-23 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_003588694.1 | 2.63E-52 | 2-oxoglutarate-dependent dioxygenase [Medicago truncatula] |
| Swissprot | tr|Q9ZTA1|AOP3C_ARATH | 7.00E-21 | 2-oxoglutarate-dependent dioxygenase AOP3 |
| trEMBL | tr|G7I6C0|G7I6C0_MEDTR | 1.00E-52 | 2-oxoglutarate-dependent dioxygenase {ECO:0000313|EMBL:AES58945.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08577 | 217 | 1010 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008577s00047026.1 | PF14226.1 | DIOX_N | 11 | 90 | 3.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.850 |
| SRR1783600 | control | 0.936 |
| SRR1783602 | moderate drought stress | 0.487 |
| SRR1811619 | moderate drought stress | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.180 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.581 |
| SRR2868004 | Drought Stress (root) | 8.262 |
| SRR2967015 | Control (root) | 7.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.080 |
| SRR9715740 | Leaf | 0.079 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.127 |
| SRR9715742 | Root | 0.826 |
| SRR9715743 | Root | 0.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 74.576 |
| SRR8749028 | MeJA induced 9h | 72.474 |
| SRR8749029 | MeJA induced 9h | 45.273 |
| SRR8749030 | Uninduced | 10.135 |
| SRR8749031 | Uninduced | 2.169 |
| SRR8749032 | Uninduced | 7.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.542 |
| SRR8400027 | Control - Root | 10.417 |