Gene detail

Gene detail information of Glyur008527s00044823

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	9.00E-95	disease resistance protein (TIR-NBS-LRR class), putative
NR	KHN12089.1	0	TMV resistance protein N [Glycine soja]
COG	YP_007069110.1	1.00E-07	sulfatase-modifying factor protein [Calothrix sp. PCC 7507]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-109	TMV resistance protein N
trEMBL	tr\|A0A072TUM4\|A0A072TUM4_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:KEH20846.1}

Sequence

Transcript Sequence

>Glyur008527s00044823.1
GTTCTGCTATGGCTATGGCGTGCACTTCTTCTCCTCCCTCCAAAGCATGATGTGTTCCTCAGCTTCAGAGGGGAGGACACGCGTGACAACTTCATCAGCCATCTCTATGCGGAACTCCGCAGGAAAAAGGTTGAAACTTTCATTGATTACAGGCTTGGCAGAGGCGAAGAGATTTCTCCCGCACTGTGCAAAGCAATAGAAGAGTCCATGATTTATGTCATCGTTCTCTCCGACCACTATGCTTCTTCCACGTGGTGCTTGGATGAACTCGCCAACATACTGGAATGCAAGAGAAGGTACGGAAGGGATGTGATACCAGTCTTCTACAGGGTGGATCCATCAAATGTTAGGCATCAGAGAGAGAGTTATGCAGAAGCATTTGTTAAGCATGGACAGCGATTTAGGGGCAGAATGGACAAAGTGCACGCGTGGAAGGCTGCTCTGACCCAAGTAGCTGGACTCTCTGGCTGGGATTCACAAGCAACCAGACCAGAACACACACTTGTTGCTGAGATTGTGAAAGACATTTTGAGAAGATTGAAGCGTTTTTACTCAAGTGATTGCCCAGGAATGATTGGAATTGACAAGCATGTTGAACAAATCCAATCCCTGTTGCAGCTTGAGTCACCGGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGTGTAGGTAAAACAACAATCGCTAGTGCAGTATATCACAAACTGGAATCCCAATTCAGTTCCAGCAGCATCGTTCTACATGCTCAACAAGAAATTGAAAGAGCTAGATCACTACACAAGATCCGAAGCAAATATTTATCAGAGCTTCTAGAGGAAGACAACCCGTCCTCTGGATCAAGGTTTTCGCGTGACCGAAGGCTCGAACGGACAGAGGTTCTCCTTGTTCTTGATGATGTGAACGATTCAGATTTAGTTACCAGCCGTTATAACTTTGGTCAGGGTAGTCGAATCATTGTGACCAGTAGAGACATGCAAGTGCTTAAGAATGTCGATGCTGATGAAATATATGAAGTATTGAATTATGCCAAAGGCGTTCCAATAGCTCTCAAATTGCAAAAGCTGGAAAAGCTTCCCGACCCTGAAATTTTCAAAGTGTTGAAATTAAGTTACGATGGGCTGGACGATGAACAGAAGGAAATATTGCTTGACATAGCATGCTTCTATAGAGGGCATTTGGAGAGCGCTGTAGTACAAACACTGGATAGCTGTGATTTCTGTGCTCACATTGGAATGGATGTTCTCAAGGATAGGTGCCTTATTTCTATTTCTCAAGGTAGAATTGTGATGCATGATCTGATACAGGAAATGGGACATGAAATCGTTCGCCAACAATGCGTCAATGATCCTGGAAAACGCAGTCGACTATGGAAGCCCGTGGAAATCTATCATGTGTTAAGAAAGAACAAGGGGACAGATGCTATTCAGGGTATATTCCTGGACATAGGCAAGATAAAAAGGAAGATGCAGAATCTTAGAATGATCCATTTAAAATTTCTCCGCTGGGATTACTTTGCTCAAAGATCTTTGCCGCTGGACTTTTGCCCAGAAAATCTTGTTATGCTTGAAATGCCTCACAGCGATCTTGAACAACTGTGGGAGGGAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08527	28	2310	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008527s00044823.1	PF01582.15	TIR	18	149	6.60E-35
Glyur008527s00044823.1	PF00931.17	NB-ARC	195	339	1.10E-20
Glyur008527s00044823.1	PF07725.7	LRR_3	518	535	7.80E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.083
SRR1783600	control	2.267
SRR1783602	moderate drought stress	2.610
SRR1811619	moderate drought stress	2.338

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.395
DRR006520	Root Summer glycyrrhizin high producing strain	0.394
DRR006521	Root Winter glycyrrhizin high producing strain	0.034
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.901
DRR006524	Root Summer glycyrrhizin low producing strain	1.756
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.032
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.247
SRR2868004	Drought Stress (root)	2.701
SRR2967015	Control (root)	3.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.929
SRR9715740	Leaf	0.779
SRR9715741	Leaf	3.494
SRR9715739	Root	0.870
SRR9715742	Root	5.959
SRR9715743	Root	5.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.060
SRR8749028	MeJA induced 9h	2.104
SRR8749029	MeJA induced 9h	0.476
SRR8749030	Uninduced	0.420
SRR8749031	Uninduced	0.065
SRR8749032	Uninduced	0.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.775
SRR8400027	Control - Root	3.468