Gene detail information of Glyur008521s00046709.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79480.2 | 9.00E-34 | Carbohydrate-binding X8 domain superfamily protein |
| NR | KHN09045.1 | 1.84E-94 | Glucan endo-1,3-beta-glucosidase 4 [Glycine soja] |
| Swissprot | tr|Q9FZ86|PDCB3_ARATH | 4.00E-22 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor) |
| trEMBL | tr|K7N1B6|K7N1B6_SOYBN | 5.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G06250.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08521 | 1011 | 2069 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008521s00046709.1 | PF07983.8 | X8 | 204 | 274 | 5.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.873 |
| SRR1783600 | control | 3.865 |
| SRR1783602 | moderate drought stress | 4.605 |
| SRR1811619 | moderate drought stress | 4.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.789 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.956 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.185 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.230 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.687 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.024 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.919 |
| SRR2868004 | Drought Stress (root) | 11.019 |
| SRR2967015 | Control (root) | 11.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.331 |
| SRR9715740 | Leaf | 0.167 |
| SRR9715741 | Leaf | 0.686 |
| SRR9715739 | Root | 1.073 |
| SRR9715742 | Root | 3.939 |
| SRR9715743 | Root | 2.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.563 |
| SRR8749028 | MeJA induced 9h | 0.459 |
| SRR8749029 | MeJA induced 9h | 0.385 |
| SRR8749030 | Uninduced | 0.033 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.095 |
| SRR8400027 | Control - Root | 3.461 |