Gene detail

Gene detail information of Glyur008457s00045984.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24280.1	2.00E-65	alpha/beta-Hydrolases superfamily protein
NR	KEH24168.1	1.06E-127	lysosomal pro-X carboxypeptidase-like protein [Medicago truncatula]
Swissprot	tr\|Q1PF50\|EDA2_ARATH	1.00E-19	Probable serine protease EDA2 (Precursor)
trEMBL	tr\|A0A072U4T9\|A0A072U4T9_MEDTR	4.00E-128	Lysosomal pro-X carboxypeptidase-like protein {ECO:0000313\|EMBL:KEH24168.1}

Sequence

Transcript Sequence

>Glyur008457s00045984.1
CTCTTATTTCTTTTCATTTTCTGATTCTTTATGTAGCACCTCTCACTCACCCAATAATTTGTCTGTGTCACTCGTGGTCGTGGCAGCCCAACCACTGGGCTTTTTCTGCGGAAAGTTGAGAATTTCTAAAAGATTCCCTTCTTTTTTTGTGAAAGACTCAATTCATAACTCGTAGCCCGCACGCAGTAGTTCATCAGAAAAACAATGGCAACTGTCTTCCAATTCAAAACCACACTGTTTTGTTTACTATTTCCTGTTCTGGGCNTCACCTTTACTTTTGCTGCCCATAATATCATACCCAGATTTCCTTCTTCTGCGGTTCGTCCAGAGCGACTACTTCAGCTACGCTCATCAGGTTCTGCTTCTGTNCCAAATGGGCTTTACAGAACAGAGTTCTTCACCCAAATACTCGATCACTTCAATTATAACCCCCAGAGCTACCAAACGTTTCAACAGAGATATCTCATCAATGATACCCNTTGGGGTGGTGCCAAGAAGAAAGCTCCAATCTTTGTCTACACAGGAAATGAAGGGGACATAGAATGGTTCACACAGAACACAGGCTTTATGTTCCAGAAAGCACCCTATTTCCAAGCCCTTTTGGTTTTCATTGAGCATAGATTCTATGGAGAGTCAATGCCATTTGGGGGAANCAAAGAGGTTGCATATGCCAATAGCAGCACACTTGGCTTTCTGAGCTCATCACAGGCATTGGCTGATTATGCCACTCTCATCATTGATCTGAAGAAGAATTTGTCAGCATCTGATTCCCCTGTTGTGGTCTTTGGAGGATCCTATGGAGGAATGCTGGCTGCGTGGTTTAGGATGAAGTATCCGCACATTGCCATTGGAGCTTTAGCATCCTCTGCTCCAATCCTTCAATTTCCGGATTTGGTTTCACCATATACATTCAACAATATCATCACGCAAGACTTCAGGGTTCCTTTTCTTTCTCCCCAAAACTGGAAACTTTTCCTTTTTTTTGGCCATGATATGTGAACACTACTCACCATATACATTCAACAATATCATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08457	1163	2534	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01285	PRCP	EC:3.4.16.2	Renin-angiotensin system	map04614
			Protein digestion and absorption	map04974

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008236 serine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008457s00045984.1	PF05577.7	Peptidase_S28	67	243	1.50E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.543
SRR1783600	control	0.501
SRR1783602	moderate drought stress	0.890
SRR1811619	moderate drought stress	0.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.053
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	61.305
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.042
SRR2868004	Drought Stress (root)	3.577
SRR2967015	Control (root)	6.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.650
SRR9715740	Leaf	5.189
SRR9715741	Leaf	6.364
SRR9715739	Root	0.096
SRR9715742	Root	0.498
SRR9715743	Root	0.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.068
SRR8749028	MeJA induced 9h	0.303
SRR8749029	MeJA induced 9h	0.352
SRR8749030	Uninduced	0.123
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.151
SRR8400027	Control - Root	7.094