Gene detail information of Glyur008414s00047436.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 1.00E-17 | F-box and associated interaction domains-containing protein |
| NR | XP_007140868.1 | 4.44E-179 | hypothetical protein PHAVU_008G148100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 5.00E-19 | F-box protein CPR30 |
| trEMBL | tr|V7B4N7|V7B4N7_PHAVU | 2.00E-179 | Uncharacterized protein {ECO:0000313|EMBL:ESW12862.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08414 | 1525 | 2616 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008414s00047436.1 | PF00646.28 | F-box | 7 | 44 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.208 |
| SRR1783600 | control | 2.203 |
| SRR1783602 | moderate drought stress | 3.453 |
| SRR1811619 | moderate drought stress | 2.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.298 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.152 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.166 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.560 |
| SRR2868004 | Drought Stress (root) | 0.690 |
| SRR2967015 | Control (root) | 1.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 10.715 |
| SRR9715742 | Root | 5.282 |
| SRR9715743 | Root | 7.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.547 |
| SRR8749028 | MeJA induced 9h | 11.772 |
| SRR8749029 | MeJA induced 9h | 5.524 |
| SRR8749030 | Uninduced | 30.877 |
| SRR8749031 | Uninduced | 10.010 |
| SRR8749032 | Uninduced | 7.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.131 |
| SRR8400027 | Control - Root | 3.928 |