Gene detail

Gene detail information of Glyur008393s00046149

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03230.1	2.00E-92	S-locus lectin protein kinase family protein
NR	XP_004513553.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like [Cicer arietinum]
Swissprot	tr\|Q9ZR08\|Y4230_ARATH	4.00E-75	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 (Precursor)
trEMBL	tr\|A0A072TI06\|A0A072TI06_MEDTR	7.00E-177	S-locus lectin kinase family protein {ECO:0000313\|EMBL:KEH16558.1}

Sequence

Transcript Sequence

>Glyur008393s00046149.1
GGCTTTGGAAGATGAGGTAGGGCCAAATTAAGTTGGCATTAACTGTGAGCGTGAGCTCCAGAAAATTAACCAATCTAATCTGACATAGTTTGCAGGTCCAGTTAACATGATAGCTGTTGTTCTCTTTAGTCTGTATGCTTGGTTGCTATGCTTTTCTCCGCCGGCGTGTCTAGCGGTAGATACTCTGAACGCCGGCCAAAATATAACAGACATCGATCAGATTGGAAACATCCTTGTTTCCACCGGGAGAAAATTTGAACTAGGCTTCTTCTCCGGCGGTTCAGGAAGATACTTAGGGATATGGTATCACCGGCAAGATGGATTCGAAACTCCAACAGTGGCGTGGGTTGCAAACAGAGACTCCCCTGTTGCTGCTGGTTCTACCGGAGTTTTCCAAATTGCAGAGGATGGGAATTTGGTTGTTGTGGACACATCTGGTTCTACCTATTGGTCATCCAAACTCAAAGGCTCTTCTTCTTCTTCATCTTCTTCTTCCAGAAACAGGACAGTGAAACTCATGGATTCTGGTAACCTGGTGTTACTAGATGAAATGAAANTGAAACTGTGGGAGAGCTTTGAACACCCAACTGACACATTCCTGCCAGGCATGAAGATGGACGGGAACATGGAATTGACTAGTTGGAGAAGCCCCCAAGACCCAGGGAGTGGGGACTTCACTTTTAAGATGGACCAAACAGGGAACAACAACGACCGTTTCGCCATCTTAGAACAAGGCCAGCTTCGCTGGGAGAGTGAAGAGCAAGGGGGGACACTGAACTTAAAAGCAGGCGCAGGAAAGTCTTCATTTGGTGACATTAGCACCGAGGTTTACAACATGTTGACCAACTTCACCAATCTTCCACGGTGGAAGAAGAACACAGCTGATGCCATGGCGTACTACGATAACAAGAGACTGTTCCTCAATTCCTCAGGGGTGGTAAAGTTTGTGTCGAGGGACAACAATTCGGATCGAGGAGTAGTGGAGGAATTCGATCGGTGGACGCAGCCGGAAAGCAAGTGCTTGACGTATAATTCTTGCGGGAACTTTACCAGCTGCAACGACAACGATATTAAGGGCGTATGCAAGTGTTTGCCTGGGTTCTCCAACGACAAGGCCTTTGGGTGTACGAGAAGAAAACCAGCAGCAATATCATGCGGAAATGACACTGACACCATCACGTTCTTAAACTTGACCATGGTGAAAATAGTAGCGCCGAATCAAAGAATCACCGCAGAAGACGAACCGGATTGCAGATCCAAGTGCCTTAAGATGTGTCCCCAGTGCCAGGCTTATTCATACCCTACACCTACACAACAGCGTGGCCTTAATCTTTCCACCTGTTGGATCTGGACAGACAATTTAGCCACCCTCAAAGAAGAGTACACCGATGGCGATGGTCGTCAAATCTCTGTCCTCATTGACAAATCAGACATAGCACCAACTCCAAGAACTTGTGAACCTTGTGGCCCGAACATAGTCCCTTATCCGCTGAGTACTGGACCCAGTTGCGGAGACCTCGCATACTTCAACTTCAGCTGCAACATGTCAACGGGTCAGCTTAGCTTCTCCACCAACGCCACCAACAGTTACCGAGTCATTCGCATAGATCCACGTTCCAGAAAGTTCTATGTCGACGCCAATTCTTTTAACCGTTATCACTGCAGCGGCGAAAAATCTCAAATTCTCAAGGTTTCTCCACCGTTTAATATCACCAACGACGACAACCCGTGCTCTGAACCAGTAGGGGTTAGTTGGCAACCACCGCCGGAACCACCCTGTGCTGAGTCCACCGATTGCCACGGTTGAAACACTCGACTTGCAAAGGGAATAGGTGTTTTTGCGATGCAAACTATAACTGGAATGGCGATCTTTTACTTTGTACCGAAAGTAAGTATGTAGTAGCTTAACATGCGGAGGATTAATTTGATAAAATTTGGACTATAAGTGTAAGTTAAGTTAAAAATTAACGTGTTTGTTCTGTTGATCTGCTGCTTTTTCAGAAGAACCAACAAGAAGCTCACTGTCATTGATTCTTGGCTTAACTCTTACAGGCGTGGTTATTCTAGCCTGCATGATTATTTTCGCCTATGTATGCAGACGGAAATTGCTCATAAGCTTAAGCAAGAAGGGGAAAGCATACAGAGAAATAGAGGGCGATTTTATGACAGTGAAAGACACGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08393	2	2470	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008393s00046149.1	PF01453.19	B_lectin	77	185	3.80E-30
Glyur008393s00046149.1	PF00954.15	S_locus_glycop	242	334	3.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.852
SRR1783600	control	0.649
SRR1783602	moderate drought stress	1.516
SRR1811619	moderate drought stress	1.741

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.049
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.849
DRR006524	Root Summer glycyrrhizin low producing strain	0.734
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.375
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.140

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.512
SRR2868004	Drought Stress (root)	4.100
SRR2967015	Control (root)	2.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.369
SRR9715740	Leaf	11.547
SRR9715741	Leaf	12.911
SRR9715739	Root	1.016
SRR9715742	Root	1.356
SRR9715743	Root	1.222

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.388
SRR8749028	MeJA induced 9h	0.444
SRR8749029	MeJA induced 9h	0.233
SRR8749030	Uninduced	0.216
SRR8749031	Uninduced	0.087
SRR8749032	Uninduced	0.178

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.102
SRR8400027	Control - Root	3.670