Gene detail information of Glyur008336s00047900 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12190.1 | 9.00E-63 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_003519509.1 | 3.33E-85 | PREDICTED: pre-mRNA branch site p14-like protein-like [Glycine max] |
| COG | YP_004339647.1 | 2.00E-09 | RNP-1 like RNA-binding protein [Hippea maritima DSM 10411] |
| Swissprot | tr|Q9FMP4|SF3B6_ARATH | 7.00E-80 | Splicing factor 3B subunit 6-like protein |
| trEMBL | tr|I1JIW3|I1JIW3_SOYBN | 1.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G44710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08336 | 470 | 844 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008336s00047900.1 | PF00076.17 | RRM_1 | 21 | 87 | 6.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.506 |
| SRR1783600 | control | 16.373 |
| SRR1783602 | moderate drought stress | 21.491 |
| SRR1811619 | moderate drought stress | 20.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 78.547 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 78.285 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 149.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 139.808 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 142.537 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 143.554 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.139 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.227 |
| SRR2868004 | Drought Stress (root) | 12.127 |
| SRR2967015 | Control (root) | 11.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.269 |
| SRR9715740 | Leaf | 5.232 |
| SRR9715741 | Leaf | 4.231 |
| SRR9715739 | Root | 5.989 |
| SRR9715742 | Root | 5.709 |
| SRR9715743 | Root | 6.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.846 |
| SRR8749028 | MeJA induced 9h | 4.937 |
| SRR8749029 | MeJA induced 9h | 9.593 |
| SRR8749030 | Uninduced | 3.233 |
| SRR8749031 | Uninduced | 1.166 |
| SRR8749032 | Uninduced | 32.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.019 |
| SRR8400027 | Control - Root | 1.927 |