Gene detail

Gene detail information of Glyur008286s00047556

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58430.1	4.00E-112	exocyst subunit exo70 family protein B1
NR	XP_004490669.1	0	PREDICTED: uncharacterized protein LOC101500706 isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9FGH9\|E70B1_ARATH	5.00E-131	Exocyst complex component EXO70B1
trEMBL	tr\|G7JZS8\|G7JZS8_MEDTR	0	Exocyst subunit exo70 family protein {ECO:0000313\|EMBL:AES98854.2}

Sequence

Transcript Sequence

>Glyur008286s00047556.1
ATGAGACTCGTAATTAATCTCGTCCAAATTTTGAGATGGTTGTTGCAACCAGAGATATGGAGATTTGTGGGCTTTGCTGCGGCTGTTGTAGGACTGCTCTGTTATGCTCTCAGCTCTTCCTTCAACCATCTCTTTGGAGAGTGGAATTTGTTGAAGGTATTTCTCTACAGTGTTTTCAGTTTCATTATCTGCTTGTTGATTTTATTTGTAAAGATATGGAAGGACTCAAGAAGCCACCGGTTCAAAGCCCATGCTGCATTTTTGGTGTTGACCATAACCTCAGTGTATTCCTTTTTCTCCGATAAAGTGATGAATGGGAAACCAGATGCATATAGTCTCGTTTCATGTGCTGCATTTGCCATCATGTCACTTAGCTTGTCAAGGCAAATTCGGTGCGGATTTGAAGTGGATCTCCTATATTTTTTTCTCGGGTGTCTAATTGTGCAACTTATGAAGTTGAAGTTGCAGTTAGGCATTGTTGGAATGGGTTTCAGCTATTTCCTTATTATTCTTCGCTCTTCCTTTTATTCCATATATGAATCGAGTGAAAATCAGCACTACGGACTCCAAGATGATAATTCAGTAGTTATTGAAGTGGTTACTCATACACCACAACTGGCCAGTGTTGATTTTGGCAGTATGATGGAACAGCTCAAGACCTGCGTGGAGGCGTTTCAGCGTGAAAATTCGAATGTCATCGACATGCTTTTGGAGCAGATTAAGGAATACCTTGAAGACCACTCTGAATTGGTGGTGACCGACCACAACTTCATGATCGATGCGCTGCCGCCGGAAACTATCAAAGACGTTCAGGAAACCGTGAATATGATGGTGAGCGCTGGGTTTGAGAAGGACTGCTCCAAGGTGTACAGCAGTTGCCGGAGGGAATGCCTGGAGGAGTGCCTATCCAATAAAATTTTCGGGTTGCAGAAGCTCGGCATCGAGGACGTTCACAATATGCCACTTAAGGACTTGAAGCACGAGATTGAAAGATGGATTAAAGTTTCCAACGTCGCTCTCAAAATATTGTTCCCTAGCGAGCGACGACTCTGCGACCTCGTTTTCTCCTCCTCCGCCACCGACCTCTCCTTCCTGGAGGTTTGCAAGGGATCCGCTATTCAGCTGCTGAGTTTCGTCGATGCCGTCACGGTGGGGAGCCGTTCGCCGGAGCAGTGGTTTAGTATTCTCGACATGTTCGAGACAATGCGTGACTTAATTCCGGTGTTTGAGTCTCTGTTTTGTGATCAGTACAGTGTGTCGCTGAGGAGTGAGGCAATCACAATTTGGAAGAGATTGGGAGAAGCAGTTAGAGGCAATTTCATGGAGTTGGAGAATAATATTCGCCAAAATCCGGTGATGGCTGTTGCCAGTGGCGGGCTTCACCCAATAACCCGCTACGTGATGAACTACCTCCGTGCCGTTTGCCAGTATCGGGGGACCCTGGAGCAAGTGTTTGAAGACTCCTCACTCTCTGTGCAGATGCATTGGGTTATGGAGCAATTGGAGAGCAATTTGGAAGAAAAGTCTAAACTCTACGAGGACCCTGCTTTGGGCTATCTTTTCTTGATCAATAACGTCAAGTACATAGTTCAGATTACCGAAGATAGTGAATTGGGTACACTTTTGGGGAATGAATGGATCCAAACACACACTATGAAAGTTTCGCAATACTATGGGCACTATGAAAGAACCACGGTGGATTTGACCCGGTCTGGAAGATATGGTGGGGTTGTTCAGCAGTTAAGGTATAGGGGCACCCAGCGGATTGGTAAAATACGGGGAAAGGACGTGGAAGGTTCGGAGAGATCAAAGGGGCCTGGAAGAGAAATGCAAGAAATAGAAGCATTACCCACACAACCACGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08286	779	2644	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006887 exocytosis

cellular_component
GO:0000145 exocyst

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008286s00047556.1	PF03081.10	Exo70	329	564	1.10E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.303
SRR1783600	control	0.310
SRR1783602	moderate drought stress	0.740
SRR1811619	moderate drought stress	0.668

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.930
DRR006520	Root Summer glycyrrhizin high producing strain	0.990
DRR006521	Root Winter glycyrrhizin high producing strain	0.060
DRR006522	Root Winter glycyrrhizin high producing strain	0.058
DRR006523	Root Summer glycyrrhizin low producing strain	0.257
DRR006524	Root Summer glycyrrhizin low producing strain	0.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.040
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.567

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.668
SRR2868004	Drought Stress (root)	0.591
SRR2967015	Control (root)	0.798

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.736
SRR9715740	Leaf	10.676
SRR9715741	Leaf	5.947
SRR9715739	Root	0.497
SRR9715742	Root	0.630
SRR9715743	Root	0.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.693
SRR8749028	MeJA induced 9h	1.124
SRR8749029	MeJA induced 9h	1.192
SRR8749030	Uninduced	0.359
SRR8749031	Uninduced	0.636
SRR8749032	Uninduced	0.633

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.412
SRR8400027	Control - Root	0.510